The relationship between Fisher's exact test and Pearson's chi-square test: A bayesian perspective

It is demonstrated in this paper that two major tests for 2 × 2 talbes are highly related from a Bayesian perspective. Although it is well-known that Fisher's exact and Pearson's chi-square tests are asymptotically equivalent, the present analysis shows that a formal similarity also exists in small samples. The key assumption that leads to the resemblance is the presence of a continuous parameter measuring association. In particular, it is shown that Pearson's probability can be obtained by integrating a two-moment approximation to the posterior distribution of the log-odds ratio. Furthermore, Pearson's chi-square test gave an excellent approximation to the actual Bayes probability in all 2×2 tables examined, except for those with extremely disproportionate marginal frequencies.