Testing for independence between pairs of autocorrelated binomial data sequences

A problem arises in analyzing the existence of interdependence between the behavioral sequences of two individuals: tests involving a statistic such as chi-square assume independent observations within each behavioral sequence, a condition which may not exist in actual practice. Using Monte Carlo simulations of binomial data sequences, we found that the use of a chi-square test frequently results in unacceptable Type I error rates when the data sequences are autocorrelated. We compared these results to those from two other methods designed specifically for testing for intersequence independence in the presence of intrasequence autocorrelation. The first method directly tests the intersequence correlation using an approximation of the variance of the intersequence correlation estimated from the sample autocorrelations. The second method uses tables of critical values of the intersequence correlation computed by Nakamuraet al. (J. Am. Stat. Assoc., 1976,71, 214–222). Although these methods were originally designed for normally distributed data, we found that both methods produced much better results than the uncorrected chi-square test when applied to binomial autocorrelated sequences. The superior method appears to be the variance approximation method, which resulted in Type I error rates that were generally less than or equal to 5% when the level of significance was set at .05.