Observer agreement for event sequences: Methods and software for sequence alignment and reliability estimates

When sequences of discrete events, or other units, are independently coded by two coders using a set of mutually exclusive and exhaustive codes, but the onset times for the codes are not preserved, it is often unclear how pairs of protocols should be aligned. Yet such alignment is required before Cohen’s kappa, a common agreement statistic, can be computed. Here we describe a method—based on the Needleman and Wunsch (1970) algorithm originally devised for aligning nucleotide sequences—for optimally aligning such sequences; we also offer the results of a simulation study of the behavior of alignment kappa with a number of variables, including number of codes, varying degrees of observer accuracy, sequence length, code variability, and parameters governing the alignment algorithm. We conclude that (1) under most reasonable circumstances, observer accuracies of 90% or better result in alignment kappas of .60 or better; (2) generally, alignment kappas are not strongly affected by sequence length, the number of codes, or the variability in the codes’ probability; (3) alignment kappas are adversely affected when missed events and false alarms are possible; and (4) cost matrices and priority orders used in the algorithm should favor substitutions (i.e., disagreements) over insertions and deletions (i.e., missed events and false alarms). Two computer programs were developed: Global Sequence Alignment, or GSA, for carrying out the simulation study, and Event Alignment, or ELign, a user-oriented program that computes alignment kappa and provides the optimal alignment given a pair of event sequences.     

Categorical Abstract Algebraic Logic: Prealgebraicity and Protoalgebraicity

Two classes of π are studied whose properties are similar to those of the protoalgebraic deductive systems of Blok and Pigozzi. The first is the class of N-protoalgebraic π-institutions and the second is the wider class of N-prealgebraic π-institutions. Several characterizations are provided. For instance, N-prealgebraic π-institutions are exactly those π-institutions that satisfy monotonicity of the N-Leibniz operator on theory systems and N-protoalgebraic π-institutions those that satisfy monotonicity of the N-Leibniz operator on theory families. Analogs of the correspondence property of Blok and Pigozzi for π-institutions are also introduced and their connections with preand protoalgebraicity are explored. Finally, relations of these two classes with the (, N)-algebraic systems, introduced previously by the author as an analog of the -algebras of Font and Jansana, and with an analog of the Suszko operator of Czelakowski for π-institutions are also investigated. Presented by Josep Maria Font     

Phenomenology and the Third Generation of Cognitive Science: Towards a Cognitive Phenomenology of the Body

Phenomenology of the body and the third generation of cognitive science, both of which attribute a central role in human cognition to the body rather than to the Cartesian notion of representation, face the criticism that higher-level cognition cannot be fully grasped by those studies. The problem here is how explicit representations, consciousness, and thoughts issue from perception and the body, and how they cooperate in human cognition. In order to address this problem, we propose a research program, a cognitive phenomenology of the body, which is basically motivated by the perspective of Merleau-Ponty. We find a substantial clue in developmental psychological studies on the body and language.

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Biotechnology,ethics and education

Fundamental differences between current and past knowledge in the field of biotechnology mean that we now have at our disposal the means to irreversibly change what is meant by ‘human nature’. This paper explores some of the ethical issues that accompany the (as yet tentative) attempt to increase scientific control over the human genetic code in what amounts to a diminishing of difference and the reduction of human life to scientific explanations at the expense of spiritual, cultural and communal considerations. Within such a limited view, the critical role of education is reduced in favour of promoting psychological efficiency, with the possibility of accelerating learning and increasing intellectual capacity through genetic manipulation. A major concern expressed in the paper is the fine line between corrective therapy and psychological enhancement: Who should be defining the normal range of human difference? And what degree of caution should be required in redesigning future generations? The unknown dangers inherent in the (perhaps irreversible) application of genetic technology to human life suggests that current precautions may not go far enough in recognising that education is a contestable field.     

Perception: Mirror-Image or Action?

In the article two viewpoints on the mind’s influence on perception are considered. One of them was developed on the assumption that perception is a nonproblematic source of knowledge about the world, which is free from mind’s influence—perception as a mirror-image. Another viewpoint is perception as action, i.e. active search and gathering the relevant information, its processing and evaluation. First viewpoint has dominated in philosophy for a long time, the second one has been developing in psychology from the 80th of the 20th century. The aim of the paper is to examine some philosophically significant corollaries from both positions concerning objectiveness, epistemological status of an observation, truth, meaning of name. Analysis showed that perception as action is non-compatible with many traditional concepts, and it goes both against empiricism and against realism as it involves some critical arguments, e.g. theory ladenness of observations, underdetermination of theory by facts, the historical development of a scientific fact.     

Empty signifiers,education and politics

The paper assumes that education is part of the process of discursive construction of society. The theoretical framework on which this argument is based includes Ernesto Laclau’s theory of the “ontological impossibility and political necessity of society”, and the role discourse and empty signifiers play in the establishment of political identities. Laclau’s theory is supplemented here by ideas of Derrida, Lacan, Žižek and Marx, and by other traits in contemporary semiotics that relate to the notion of “the void” in semantic systems. My claim is that empty signifiers, crucial to the production of the totality of society, are discursively produced, among others, in pedagogical debates. This is illustrated by one historical example (Rouuseau), which gives ground for more contemporary analyses, and on the basis of the present economic discourse of educating and the idea of “knowledge society”. The main conclusion is that education, in contemporary discourse of learning, becomes a neurotic symptom of the lack of overt domination in social relations.

个体智力差异的脑电生理学基础 ——来自EEG和ERP的证据

智力的脑电生理学研究近年来蓬勃发展。文章分析了EEG、ERP这两种主要的电生理学技术在智力差异探究中的应用,在智力水平与大脑激活程度的负相关受到任务难度、内容以及被试性别的影响等方面的研究所取得的进展;指出了以往个体智力差异脑电生理学研究中存在的ERP智力差异研究采用的任务略显简单、难以体现智力活动的本质等问题;认为今后利用多种脑电技术结合研究个体智力差异的趋势日趋明显。     

Iffy beliefs: Conditional thinking and belief change

The ability to entertain possibilities and draw inferences about them is essential to human intelligence. We examine the hypothesis that conditional if-then statements trigger a mental simulation process in which people suppose the antecedent (if statement) to be true and evaluate the consequent (then statement) in that context. On the assumption that supposing an event to be true increases belief that the event has occurred or will occur, this hypothesis is consistent with the claim that evaluating a conditional will heighten belief in its antecedent more than in its consequent. Two experiments, employing conditionals of the form If animal A has property X, then animal B will have property X, in which X was a property that people could not readily relate to the animals, supported this claim. The effect was stronger following the evaluation of conditionals with dissimilar animal categories.     

Informed Consent in Emergency Research: A Contradiction in Terms

Improving the treatment of life threatening emergency illness or disease requires that new or novel therapies be assessed in clinical trials. As most subjects for these trials will be incapacitated there is some controversy about they might best protected whilst still allowing research to continue. Recent European and UK clinical trials legislation, which has effectively stopped research into emergency conditions, is discussed. Possible changes to these regulations are proposed.