CPCA: A program for principal component analysis with external information on subjects and variables

A program is described for principal component analysis with external information on subjects and variables. This method is calledconstrained principal component analysis (CPCA), in which regression analysis and principal component analysis are combined into a unified framework that allows a full exploration of data structures both within and outside known information on subjects and variables. Many existing methods are special cases of CPCA, and the program can be used for multivariate multiple regression, redundancy analysis, double redundancy analysis, dual scaling with external criteria, vector preference models, and GMANOVA (growth curve models).     

Choice model analysis of the “pick any/n” type of binary data

In the “pick any/n” method, subjects are asked to choose any number of items from a list of n items according to some criterion. This kind of data can be analyzed as a special case of either multiple-choice data or successive categories data where the number of response categories is limited to two. An item response model was proposed for the latter case, which is a combination of an unfolding model and a choice model. The marginal maximum-likelihood estimation method was developed for parameter estimation to avoid incidental parameters, and an expectation-maximization algorithm used for numerical optimization. Two examples of analysis are given to illustrate the proposed method, which we call MAXSC.     

A generalization of Takane's algorithm for dedicom

An algorithm is described for fitting the DEDICOM model for the analysis of asymmetric data matrices. This algorithm generalizes an algorithm suggested by Takane in that it uses a damping parameter in the iterative process. Takane's algorithm does not always converge monotonically. Based on the generalized algorithm, a modification of Takane's algorithm is suggested such that this modified algorithm converges monotonically. It is suggested to choose as starting configurations for the algorithm those configurations that yield closed-form solutions in some special cases. Finally, a sufficient condition is described for monotonic convergence of Takane's original algorithm.Financial Support by the Netherlands organization for scientific research (NWO) is gratefully acknowledged. The authors are obliged to Richard Harshman.     

Ideal point discriminant analysis

A new method of multiple discriminant analysis was developed that allows a mixture of continuous and discrete predictors. The method can be justified under a wide class of distributional assumptions on the predictor variables. The method can also handle three different sampling situations, conditional, joint and separate. In this method both subjects (cases or any other sampling units) and criterion groups are represented as points in a multidimensional euclidean space. The probability of a particular subject belonging to a particular criterion group is stated as a decreasing function of the distance between the corresponding points. A maximum likelihood estimation procedure was developed and implemented in the form of a FORTRAN program. Detailed analyses of two real data sets were reported to demonstrate various advantages of the proposed method. These advantages mostly derive from model evaluation capabilities based on the Akaike Information Criterion (AIC).The work reported in this paper has been supported by Grant A6394 from the Natural Sciences and Engineering Research Council of Canada and by a leave grant from the Social Sciences and Humanities Research Council of Canada to the first author. Portions of this study were conducted while the first author was at the Institute of Statistical Mathematics in Tokyo on leave from McGill University. He would like to express his gratitude to members of the Institute for their hospitality. Thanks are also due to T. Komazawa at the Institute for letting us use his data, to W. J. Krzanowski at the University of Reading for providing us with Armitage, McPherson, and Copas' data, and to Don Ramirez, Jim Ramsay and Stan Sclove for their helpful comments on an earlier draft of this paper.     

Conditioned taste aversion is enhanced when the unconditioned stimulus is presented in a different context

Using a conditioned taste aversion procedure with rats as the subjects, two experiments examined the effect of presenting a conditioned stimulus (CS saccharin solution) in one context followed by an unconditioned stimulus (US LiCl) in a different context. Experiment 1 showed that animals which received the above-mentioned procedure (Group D) showed a more marked conditioned aversion to the CS than animals which were given both the CS and the US in the same context (Group S). Experiment 2 found that in both Group D and Group S, aversion to the CS increased when the subjects were exposed to the conditioned context after the conditioning. These findings supported the argument that the strength of the CS-US association acquired during conditioning is compared with that of the context-US to determine the magnitude of aversion revealed to the CS.     

A multivariate reduced-rank growth curve model with unbalanced data

A multivariate reduced-rank growth curve model is proposed that extends the univariate reducedrank growth curve model to the multivariate case, in which several response variables are measured over multiple time points. The proposed model allows us to investigate the relationships among a number of response variables in a more parsimonious way than the traditional growth curve model. In addition, the method is more flexible than the traditional growth curve model. For example, response variables do not have to be measured at the same time points, nor the same number of time points. It is also possible to apply various kinds of basis function matrices with different ranks across response variables. It is not necessary to specify an entire set of basis functions in advance. Examples are given for illustration.The work reported in this paper was supported by Grant A6394 from the Natural Sciences and Engineering Research Council of Canada to the second author. We thank Jennifer Stephan for her helpful comments on an earlier version of this paper. We also thank Patrick Curran and Terry Duncan for kindly letting us use the NLSY and substance use data, respectively. The substance use data were provided by Grant DA09548 from the National Institute on Drug Abuse.     

Generalized constrained multiple correspondence analysis

A comprehensive approach for imposing both row and column constraints on multivariate discrete data is proposed that may be called generalized constrained multiple correspondence analysis (GCMCA). In this method each set of discrete data is first decomposed into several submatrices according to its row and column constraints, and then multiple correspondence analysis (MCA) is applied to the decomposed submatrices to explore relationships among them. This method subsumes existing constrained and unconstrained MCA methods as special cases and also generalizes various kinds of linearly constrained correspondence analysis methods. An example is given to illustrate the proposed method.Heungsun Hwang is now at Claes Fornell International Group. The work reported in this paper was supported by Grant A6394 from the Natural Sciences and Engineering Research Council of Canada to the second author.     

Dynamic GSCA (Generalized Structured Component Analysis) with Applications to the Analysis of Effective Connectivity in Functional Neuroimaging Data

We propose a new method of structural equation modeling (SEM) for longitudinal and time series data, named Dynamic GSCA (Generalized Structured Component Analysis). The proposed method extends the original GSCA by incorporating a multivariate autoregressive model to account for the dynamic nature of data taken over time. Dynamic GSCA also incorporates direct and modulating effects of input variables on specific latent variables and on connections between latent variables, respectively. An alternating least square (ALS) algorithm is developed for parameter estimation. An improved bootstrap method called a modified moving block bootstrap method is used to assess reliability of parameter estimates, which deals with time dependence between consecutive observations effectively. We analyze synthetic and real data to illustrate the feasibility of the proposed method.     

Functional Multiple-Set Canonical Correlation Analysis

We propose functional multiple-set canonical correlation analysis for exploring associations among multiple sets of functions. The proposed method includes functional canonical correlation analysis as a special case when only two sets of functions are considered. As in classical multiple-set canonical correlation analysis, computationally, the method solves a matrix eigen-analysis problem through the adoption of a basis expansion approach to approximating data and weight functions. We apply the proposed method to functional magnetic resonance imaging (fMRI) data to identify networks of neural activity that are commonly activated across subjects while carrying out a working memory task.