An overview of Markov chain methods for the study of stage-sequential developmental processes

This article presents an overview of quantitative methodologies for the study of stage-sequential development based on extensions of Markov chain modeling. Four methods are presented that exemplify the flexibility of this approach: the manifest Markov model, the latent Markov model, latent transition analysis, and the mixture latent Markov model. A special case of the mixture latent Markov model, the so-called mover-stayer model, is used in this study. Unconditional and conditional models are estimated for the manifest Markov model and the latent Markov model, where the conditional models include a measure of poverty status. Issues of model specification, estimation, and testing using the Mplus software environment are briefly discussed, and the Mplus input syntax is provided. The author applies these 4 methods to a single example of stage-sequential development in reading competency in the early school years, using data from the Early Childhood Longitudinal Study--Kindergarten Cohort.     

Bayesian Diagnostics of Hidden Markov Structural Equation Models with Missing Data

Cocaine is a type of drug that functions to increase the availability of the neurotransmitter dopamine in the brain. However, cocaine dependence or abuse is highly related to an increased risk of psychiatric disorders and deficits in cognitive performance, attention, and decision-making abilities. Given the chronic and persistent features of drug addiction, the progression of abstaining from cocaine often evolves across several states, such as addiction to, moderate dependence on, and swearing off cocaine. Hidden Markov models (HMMs) are well suited to the characterization of longitudinal data in terms of a set of unobservable states, and have increasingly been used to uncover the dynamic heterogeneity in progressive diseases or activities. However, the existence of outliers or influential points may misidentify the hidden states and distort the associated inference. In this study, we develop a Bayesian local influence procedure for HMMs with latent variables in the presence of missing data. The proposed model enables us to investigate the dynamic heterogeneity of multivariate longitudinal data, reveal how the interrelationships among latent variables change from one state to another, and simultaneously conduct statistical diagnosis for the given data, model assumptions, and prior inputs. We apply the proposed procedure to analyze a dataset collected by the UCLA center for advancing longitudinal drug abuse research. Several outliers or influential points that seriously influence estimation results are identified and removed. The proposed procedure also discovers the effects of treatment and individuals’ psychological problems on cocaine use behavior and delineates their dynamic changes across the cocaine-addiction states.     

Latent Class Models for Diary Method Data: Parameter Estimation by Local Computations

The increasing use of diary methods calls for the development of appropriate statistical methods. For the resulting panel data, latent Markov models can be used to model both individual differences and temporal dynamics. The computational burden associated with these models can be overcome by exploiting the conditional independence relations implied by the model. This is done by associating a probabilistic model with a directed acyclic graph, and applying transformations to the graph. The structure of the transformed graph provides a factorization of the joint probability function of the manifest and latent variables, which is the basis of a modified and more efficient E-step of the EM algorithm. The usefulness of the approach is illustrated by estimating a latent Markov model involving a large number of measurement occasions and, subsequently, a hierarchical extension of the latent Markov model that allows for transitions at different levels. Furthermore, logistic regression techniques are used to incorporate restrictions on the conditional probabilities and to account for the effect of covariates. Throughout, models are illustrated with an experience sampling methodology study on the course of emotions among anorectic patients. Frank Rijmen was partly supported by the Fund for Scientific Research Flanders (FWO).     

Introduction to the Special Section on Mixture Modeling in Personality Assessment

Latent variable models offer a conceptual and statistical framework for evaluating the underlying structure of psychological constructs, including personality and psychopathology. Complex structures that combine or compare categorical and dimensional latent variables can be accommodated using mixture modeling approaches, which provide a powerful framework for testing nuanced theories about psychological structure. This special series includes introductory primers on cross-sectional and longitudinal mixture modeling, in addition to empirical examples applying these techniques to real-world data collected in clinical settings. This group of articles is designed to introduce personality assessment scientists and practitioners to a general latent variable framework that we hope will stimulate new research and application of mixture models to the assessment of personality and its pathology.     

Analysis of multivariate frequency data by graphical models and generalizations of the multidimensional row-column association model

Models used to analyze cross-classifications of counts from psychological experiments must represent associations between multiple discrete variables and take into account attributes of stimuli, experimental conditions, or characteristics of subjects. The models must also lend themselves to psychological interpretations about underlying structures mediating the relationship between stimuli and responses. To meet these needs, the author extends the graphical latent variable models for nominal and/or ordinal data proposed by C. J. Anderson and J. K. Vermunt (2000) to situations in which dependencies between observed variables are not fully accounted for by the latent variables. The graphical models provide a unified framework for studying multivariate associations that include log-linear models and log-multiplicative association models as special cases.     

项目间多维测验作答时间数据分析：潜在特质速度间效应建模

随着计算机测验使用的普及化,被试在心理与教育测验上的作答反应时的获取也越发便利。为了充分利用项目反应时信息,单维与多维的反应时模型相继被提出。然后,在项目间多维反应时数据中,潜在特质速度之间可能存在共同关系（比如,层阶关系）,此时现有的反应时模型并不能适用。基于此,本研究提出了高阶对数正态反应时模型与双因子对数正态反应时模型。在模拟研究中,高阶对数正态反应时模型与双因子对数正态反应时模型的各参数都能被准确估计。在瑞文标准推理测验的三组测验项目的反应时数据中,双因子对数正态反应时模型表现出更为优秀的拟合效果,同时基于多个统计量说明了局部与全局潜在特质速度同时存在的必要性。因此,在项目间多维测验反应时数据分析中,非常有必要考虑多维潜在特质速度之间的共同效应。     

Global and local covert visual attention: Evidence from a bayesian hidden markov model

Psychological, psychophysical and physiological research indicates that people switch between two covert attention states, local and global attention, while visually exploring complex scenes. The focus in the local attention state is on specific aspects and details of the scene, and on examining its content with greater visual detail. The focus in the global attention state is on exploring the informative and perceptually salient areas of the scene, and possibly on integrating the information contained therein. The existence of these two visual attention states, their relative prevalence and sequence in time has remained empirically untested to date. To fill this gap, we develop a psychometric model of visual covert attention that extends recent work on hidden Markov models, and we test it using eye-movement data. The model aims to describe the observed time series of saccades typically collected in eye-movement research by assuming a latent Markov process, indicative of the brain switching between global and local covert attention. We allow subjects to be in either state while exploring a stimulus visually, and to switch between them an arbitrary number of times. We relax the no-memory-property of the Markov chain. The model that we develop is estimated with MCMC methodology and calibrated on eye-movement data collected in a study of consumers' attention to print advertisements in magazines.We thank Dominique Claessens of Verify International for making the data available to us.     

Extending exploratory diagnostic classification models: Inferring the effect of covariates

Diagnostic models provide a statistical framework for designing formative assessments by classifying student knowledge profiles according to a collection of fine-grained attributes. The context and ecosystem in which students learn may play an important role in skill mastery, and it is therefore important to develop methods for incorporating student covariates into diagnostic models. Including covariates may provide researchers and practitioners with the ability to evaluate novel interventions or understand the role of background knowledge in attribute mastery. Existing research is designed to include covariates in confirmatory diagnostic models, which are also known as restricted latent class models. We propose new methods for including covariates in exploratory RLCMs that jointly infer the latent structure and evaluate the role of covariates on performance and skill mastery. We present a novel Bayesian formulation and report a Markov chain Monte Carlo algorithm using a Metropolis-within-Gibbs algorithm for approximating the model parameter posterior distribution. We report Monte Carlo simulation evidence regarding the accuracy of our new methods and present results from an application that examines the role of student background knowledge on the mastery of a probability data set.     

On the explaining‐away phenomenon in multivariate latent variable models

Many probabilistic models for psychological and educational measurements contain latent variables. Well‐known examples are factor analysis, item response theory, and latent class model families. We discuss what is referred to as the ‘explaining‐away’ phenomenon in the context of such latent variable models. This phenomenon can occur when multiple latent variables are related to the same observed variable, and can elicit seemingly counterintuitive conditional dependencies between latent variables given observed variables. We illustrate the implications of explaining away for a number of well‐known latent variable models by using both theoretical and real data examples.     

A Bayesian Modeling Approach for Generalized Semiparametric Structural Equation Models

In behavioral, biomedical, and psychological studies, structural equation models (SEMs) have been widely used for assessing relationships between latent variables. Regression-type structural models based on parametric functions are often used for such purposes. In many applications, however, parametric SEMs are not adequate to capture subtle patterns in the functions over the entire range of the predictor variable. A different but equally important limitation of traditional parametric SEMs is that they are not designed to handle mixed data types—continuous, count, ordered, and unordered categorical. This paper develops a generalized semiparametric SEM that is able to handle mixed data types and to simultaneously model different functional relationships among latent variables. A structural equation of the proposed SEM is formulated using a series of unspecified smooth functions. The Bayesian P-splines approach and Markov chain Monte Carlo methods are developed to estimate the smooth functions and the unknown parameters. Moreover, we examine the relative benefits of semiparametric modeling over parametric modeling using a Bayesian model-comparison statistic, called the complete deviance information criterion (DIC). The performance of the developed methodology is evaluated using a simulation study. To illustrate the method, we used a data set derived from the National Longitudinal Survey of Youth.     

A Bayesian approach to nonlinear latent variable models using the Gibbs sampler and the metropolis-hastings algorithm

Nonlinear latent variable models are specified that include quadratic forms and interactions of latent regressor variables as special cases. To estimate the parameters, the models are put in a Bayesian framework with conjugate priors for the parameters. The posterior distributions of the parameters and the latent variables are estimated using Markov chain Monte Carlo methods such as the Gibbs sampler and the Metropolis-Hastings algorithm. The proposed estimation methods are illustrated by two simulation studies and by the estimation of a non-linear model for the dependence of performance on task complexity and goal specificity using empirical data.     

A general latent assignment approach for modeling psychological contaminants

Data from psychological experiments are rife with ‘contaminants’, which can generally be defined as data generated by psychological processes different from those intended as the object of study. Contaminant data can interfere with the testing of substantive psychological models and their parameters, so it is important to have methods for their identification and removal. After noting that current practices in cognitive modeling for dealing with contaminants are not completely satisfactory, we argue for a general latent mixture approach to the problem. We demonstrate the tractability and effectiveness of the approach concretely, through a series of four applications. These applications involve a simple choice problem, a diffusion model of a response time and accuracy in decision-making, a hierarchical signal detection model of recognition memory, and a reinforcement learning model of decision-making on bandit problems. We conclude that developing models of contaminant processes requires the same sort of creative effort that is needed to model substantive psychological processes, but that it is a necessary endeavour that can be coherently and usefully pursued within the latent mixture modeling approach.     

A Latent Transition Model With Logistic Regression

Latent transition models increasingly include covariates that predict prevalence of latent classes at a given time or transition rates among classes over time. In many situations, the covariate of interest may be latent. This paper describes an approach for handling both manifest and latent covariates in a latent transition model. A Bayesian approach via Markov chain Monte Carlo (MCMC) is employed in order to achieve more robust estimates. A case example illustrating the model is provided using data on academic beliefs and achievement in a low-income sample of adolescents in the United States. This research was partially supported by the National Institute on Drug Abuse Grant 1-R03-DA021639. This research was partially supported by the National Institute on Drug Abuse Grant 1-P50-DA10075, The Methodology Center, The Pennsylvania State University. This research was partially supported by the National Institute of Mental Health funds as part of the Studying Diverse Lives research support program at the Henry A. Murray Research Archive, Institute for Quantitative Science, Harvard University.     

Model Evaluation and Multiple Strategies in Cognitive Diagnosis: An Analysis of Fraction Subtraction Data

This paper studies three models for cognitive diagnosis, each illustrated with an application to fraction subtraction data. The objective of each of these models is to classify examinees according to their mastery of skills assumed to be required for fraction subtraction. We consider the DINA model, the NIDA model, and a new model that extends the DINA model to allow for multiple strategies of problem solving. For each of these models the joint distribution of the indicators of skill mastery is modeled using a single continuous higher-order latent trait, to explain the dependence in the mastery of distinct skills. This approach stems from viewing the skills as the specific states of knowledge required for exam performance, and viewing these skills as arising from a broadly defined latent trait resembling the θ of item response models. We discuss several techniques for comparing models and assessing goodness of fit. We then implement these methods using the fraction subtraction data with the aim of selecting the best of the three models for this application. We employ Markov chain Monte Carlo algorithms to fit the models, and we present simulation results to examine the performance of these algorithms. The work reported here was performed under the auspices of the External Diagnostic Research Team funded by Educational Testing Service. Views expressed in this paper does not necessarily represent the views of Educational Testing Service.     

Bayesian analysis of mixtures in structural equation models with non‐ignorable missing data

Structural equation models (SEMs) have become widely used to determine the interrelationships between latent and observed variables in social, psychological, and behavioural sciences. As heterogeneous data are very common in practical research in these fields, the analysis of mixture models has received a lot of attention in the literature. An important issue in the analysis of mixture SEMs is the presence of missing data, in particular of data missing with a non‐ignorable mechanism. However, only a limited amount of work has been done in analysing mixture SEMs with non‐ignorable missing data. The main objective of this paper is to develop a Bayesian approach for analysing mixture SEMs with an unknown number of components and non‐ignorable missing data. A simulation study shows that Bayesian estimates obtained by the proposed Markov chain Monte Carlo methods are accurate and the Bayes factor computed via a path sampling procedure is useful for identifying the correct number of components, selecting an appropriate missingness mechanism, and investigating various effects of latent variables in the mixture SEMs. A real data set on a study of job satisfaction is used to demonstrate the methodology.     

An analysis of some conditions for representingN state Markov processes as general all or none models

Recently Markov learning models with two unidentifiable presolution success states, an error state, and an absorbing learned state, have been suggested to handle certain aspects of data better than the three state Markov models of the General All or None model type. In attempting to interpret psychologically, and evaluate statistically the adequacy of various classes of Markov models, a knowledge of the relationship between the classes of models would be helpful. This paper considers some aspects of the relationship between the class of General All or None models and the class of Stationary Absorbing Markov models withN error states, andM presolution success states.     

Ordinal state-trait regression for intensive longitudinal data

In many psychological studies, in particular those conducted by experience sampling, mental states are measured repeatedly for each participant. Such a design allows for regression models that separate between- from within-person, or trait-like from state-like, components of association between two variables. But these models are typically designed for continuous variables, whereas mental state variables are most often measured on an ordinal scale. In this paper we develop a model for disaggregating between- from within-person effects of one ordinal variable on another. As in standard ordinal regression, our model posits a continuous latent response whose value determines the observed response. We allow the latent response to depend nonlinearly on the trait and state variables, but impose a novel penalty that shrinks the fit towards a linear model on the latent scale. A simulation study shows that this penalization approach is effective at finding a middle ground between an overly restrictive linear model and an overfitted nonlinear model. The proposed method is illustrated with an application to data from the experience sampling study of Baumeister et al. (2020, Personality and Social Psychology Bulletin, 46, 1631).     

Theoretical and empirical review of multinomial process tree modeling

We review a current and popular class of cognitive models calledmultinomial processing tree (MPT) models. MPT models are simple, substantively motivated statistical models that can be applied to categorical data. They are useful as data-analysis tools for measuring underlying or latent cognitive capacities and as simple models for representing and testing competing psychological theories. We formally describe the cognitive structure and parametric properties of the class of MPT models and provide an inferential statistical analysis for the entire class. Following this, we provide a comprehensive review of over 80 applications of MPT models to a variety of substantive areas in cognitive psychology, including various types of human memory, visual and auditory perception, and logical reasoning. We then address a number of theoretical issues relevant to the creation and evaluation of MPT models, including model development, model validity, discrete-state assumptions, statistical issues, and the relation between MPT models and other mathematical models. In the conclusion, we consider the current role of MPT models in psychological research and possible future directions.     

A Note on the Hierarchical Model for Responses and Response Times in Tests of van der Linden (2007)

Findings suggest that in psychological tests not only the responses but also the times needed to give the responses are related to characteristics of the test taker. This observation has stimulated the development of latent trait models for the joint distribution of the responses and the response times. Such models are motivated by the hope to improve the estimation of the latent traits by additionally considering response time. In this article, the potential relevance of the response times for psychological assessment is explored for the model of van der Linden (Psychometrika 72:287–308, 2007) that seems to have become the standard approach to response time modeling in educational testing. It can be shown that the consideration of response times increases the information of the test. However, one also can prove that the contribution of the response times to the test information is bounded and has a simple limit.