Handling Missing Covariates in Conditional Mixture Models Under Missing at Random Assumptions

Mixture modeling is a popular method that accounts for unobserved population heterogeneity using multiple latent classes that differ in response patterns. Psychologists use conditional mixture models to incorporate covariates into between-class and/or within-class regressions. Although psychologists often have missing covariate data, conditional mixtures are currently fit with a conditional likelihood, treating covariates as fixed and fully observed. Under this exogenous-x approach, missing covariates are handled primarily via listwise deletion. This sacrifices efficiency and does not allow missingness to depend on observed outcomes. Here we describe a modified joint likelihood approach that (a) allows inference about parameters of the exogenous-x conditional mixture even with nonnormal covariates, unlike a conventional multivariate mixture; (b) retains all cases under missing at random assumptions; (c) yields lower bias and higher efficiency than the exogenous-x approach under a variety of conditions with missing covariates; and (d) is straightforward to implement in available commercial software. The proposed approach is illustrated with an empirical analysis predicting membership in latent classes of conduct problems. Recommendations for practice are discussed.     

SEM with Missing Data and Unknown Population Distributions Using Two-Stage ML: Theory and Its Application

This article provides the theory and application of the 2-stage maximum likelihood (ML) procedure for structural equation modeling (SEM) with missing data. The validity of this procedure does not require the assumption of a normally distributed population. When the population is normally distributed and all missing data are missing at random (MAR), the direct ML procedure is nearly optimal for SEM with missing data. When missing data mechanisms are unknown, including auxiliary variables in the analysis will make the missing data mechanism more likely to be MAR. It is much easier to include auxiliary variables in the 2-stage ML than in the direct ML. Based on most recent developments for missing data with an unknown population distribution, the article first provides the least technical material on why the normal distribution-based ML generates consistent parameter estimates when the missing data mechanism is MAR. The article also provides sufficient conditions for the 2-stage ML to be a valid statistical procedure in the general case. For the application of the 2-stage ML, an SAS IML program is given to perform the first-stage analysis and EQS codes are provided to perform the second-stage analysis. An example with open- and closed-book examination data is used to illustrate the application of the provided programs. One aim is for quantitative graduate students/applied psychometricians to understand the technical details for missing data analysis. Another aim is for applied researchers to use the method properly.     

Nonlinear Random-Effects Mixture Models for Repeated Measures

A mixture model for repeated measures based on nonlinear functions with random effects is reviewed. The model can include individual schedules of measurement, data missing at random, nonlinear functions of the random effects, of covariates and of residuals. Individual group membership probabilities and individual random effects are obtained as empirical Bayes predictions. Although this is a complicated model that combines a mixture of populations, nonlinear regression, and hierarchical models, it is straightforward to estimate by maximum likelihood using SAS PROC NLMIXED. Many different models can be studied with this procedure. The model is more general than those that can be estimated with most special purpose computer programs currently available because the response function is essentially any form of nonlinear regression. Examples and sample code are included to illustrate the method.     

Asymptotic bias of normal-distribution-based maximum likelihood estimates of moderation effects with data missing at random

Moderation analysis is useful for addressing interesting research questions in social sciences and behavioural research. In practice, moderated multiple regression (MMR) models have been most widely used. However, missing data pose a challenge, mainly because the interaction term is a product of two or more variables and thus is a non-linear function of the involved variables. Normal-distribution-based maximum likelihood (NML) has been proposed and applied for estimating MMR models with incomplete data. When data are missing completely at random, moderation effect estimates are consistent. However, simulation results have found that when data in the predictor are missing at random (MAR), NML can yield inaccurate estimates of moderation effects when the moderation effects are non-null. Simulation studies are subject to the limitation of confounding systematic bias with sampling errors. Thus, the purpose of this paper is to analytically derive asymptotic bias of NML estimates of moderation effects with MAR data. Results show that when the moderation effect is zero, there is no asymptotic bias in moderation effect estimates with either normal or non-normal data. When the moderation effect is non-zero, however, asymptotic bias may exist and is determined by factors such as the moderation effect size, missing-data proportion, and type of missingness dependence. Our analytical results suggest that researchers should apply NML to MMR models with caution when missing data exist. Suggestions are given regarding moderation analysis with missing data.     

Simple imputation methods versus direct likelihood analysis for missing item scores in multilevel educational data

Missing data, such as item responses in multilevel data, are ubiquitous in educational research settings. Researchers in the item response theory (IRT) context have shown that ignoring such missing data can create problems in the estimation of the IRT model parameters. Consequently, several imputation methods for dealing with missing item data have been proposed and shown to be effective when applied with traditional IRT models. Additionally, a nonimputation direct likelihood analysis has been shown to be an effective tool for handling missing observations in clustered data settings. This study investigates the performance of six simple imputation methods, which have been found to be useful in other IRT contexts, versus a direct likelihood analysis, in multilevel data from educational settings. Multilevel item response data were simulated on the basis of two empirical data sets, and some of the item scores were deleted, such that they were missing either completely at random or simply at random. An explanatory IRT model was used for modeling the complete, incomplete, and imputed data sets. We showed that direct likelihood analysis of the incomplete data sets produced unbiased parameter estimates that were comparable to those from a complete data analysis. Multiple-imputation approaches of the two-way mean and corrected item mean substitution methods displayed varying degrees of effectiveness in imputing data that in turn could produce unbiased parameter estimates. The simple random imputation, adjusted random imputation, item means substitution, and regression imputation methods seemed to be less effective in imputing missing item scores in multilevel data settings.     

Evaluation of latent construct correlations in the presence of missing data: a note on a latent variable modelling approach

A latent variable modelling approach is discussed, which can be used to evaluate indices of linear relationship between latent constructs in incomplete data sets. The method is based on an application of maximum-likelihood estimation and inclusion of covariates predictive of missing values. The approach can be employed for point and interval estimation of latent correlations in the presence of missing data, and capitalizes on enhanced plausibility of the assumption of data missing at random through introduction of informative covariates. The method is illustrated on empirical data.     

Growth modeling with nonignorable dropout: alternative analyses of the STAR*D antidepressant trial

This article uses a general latent variable framework to study a series of models for nonignorable missingness due to dropout. Nonignorable missing data modeling acknowledges that missingness may depend not only on covariates and observed outcomes at previous time points as with the standard missing at random assumption, but also on latent variables such as values that would have been observed (missing outcomes), developmental trends (growth factors), and qualitatively different types of development (latent trajectory classes). These alternative predictors of missing data can be explored in a general latent variable framework with the Mplus program. A flexible new model uses an extended pattern-mixture approach where missingness is a function of latent dropout classes in combination with growth mixture modeling. A new selection model not only allows an influence of the outcomes on missingness but allows this influence to vary across classes. Model selection is discussed. The missing data models are applied to longitudinal data from the Sequenced Treatment Alternatives to Relieve Depression (STAR*D) study, the largest antidepressant clinical trial in the United States to date. Despite the importance of this trial, STAR*D growth model analyses using nonignorable missing data techniques have not been explored until now. The STAR*D data are shown to feature distinct trajectory classes, including a low class corresponding to substantial improvement in depression, a minority class with a U-shaped curve corresponding to transient improvement, and a high class corresponding to no improvement. The analyses provide a new way to assess drug efficiency in the presence of dropout.     

计划缺失设计——通过有意缺失让研究更高效

缺失值是社会科学研究中非常普遍的现象。全息极大似然估计和多重插补是目前处理缺失值最有效的方法。计划缺失设计利用特殊的实验设计有意产生缺失值, 再用现代的缺失值处理方法来完成统计分析, 获得无偏的统计结果。计划缺失设计可用于横断面调查减少(或增加)问卷长度和纵向调查减少测量次数, 也可用于提高测量有效性。常用的计划缺失设计有三式设计和两种方法测量。     

Methods for Mediation Analysis with Missing Data

Despite wide applications of both mediation models and missing data techniques, formal discussion of mediation analysis with missing data is still rare. We introduce and compare four approaches to dealing with missing data in mediation analysis including listwise deletion, pairwise deletion, multiple imputation (MI), and a two-stage maximum likelihood (TS-ML) method. An R package bmem is developed to implement the four methods for mediation analysis with missing data in the structural equation modeling framework, and two real examples are used to illustrate the application of the four methods. The four methods are evaluated and compared under MCAR, MAR, and MNAR missing data mechanisms through simulation studies. Both MI and TS-ML perform well for MCAR and MAR data regardless of the inclusion of auxiliary variables and for AV-MNAR data with auxiliary variables. Although listwise deletion and pairwise deletion have low power and large parameter estimation bias in many studied conditions, they may provide useful information for exploring missing mechanisms.     

Tests of homogeneity of means and covariance matrices for multivariate incomplete data

Existing test statistics for assessing whether incomplete data represent a missing completely at random sample from a single population are based on a normal likelihood rationale and effectively test for homogeneity of means and covariances across missing data patterns. The likelihood approach cannot be implemented adequately if a pattern of missing data contains very few subjects. A generalized least squares rationale is used to develop parallel tests that are expected to be more stable in small samples. Three factors were varied for a simulation: number of variables, percent missing completely at random, and sample size. One thousand data sets were simulated for each condition. The generalized least squares test of homogeneity of means performed close to an ideal Type I error rate for most of the conditions. The generalized least squares test of homogeneity of covariance matrices and a combined test performed quite well also.Preliminary results on this research were presented at the 1999 Western Psychological Association convention, Irvine, CA, and in the UCLA Statistics Preprint No. 265 (http://www.stat.ucla.edu). The assistance of Ke-Hai Yuan and several anonymous reviewers is gratefully acknowledged.     

Imputation methods for missing data in educational diagnostic evaluation

In the diagnostic evaluation of educational systems, self-reports are commonly used to collect data, both cognitive and orectic. For various reasons, in these self-reports, some of the students' data are frequently missing. The main goal of this research is to compare the performance of different imputation methods for missing data in the context of the evaluation of educational systems. On an empirical database of 5,000 subjects, 72 conditions were simulated: three levels of missing data, three types of loss mechanisms, and eight methods of imputation. The levels of missing data were 5%, 10%, and 20%. The loss mechanisms were set at: Missing completely at random, moderately conditioned, and strongly conditioned. The eight imputation methods used were: listwise deletion, replacement by the mean of the scale, by the item mean, the subject mean, the corrected subject mean, multiple regression, and Expectation-Maximization (EM) algorithm, with and without auxiliary variables. The results indicate that the recovery of the data is more accurate when using an appropriate combination of different methods of recovering lost data. When a case is incomplete, the mean of the subject works very well, whereas for completely lost data, multiple imputation with the EM algorithm is recommended. The use of this combination is especially recommended when data loss is greater and its loss mechanism is more conditioned. Lastly, the results are discussed, and some future lines of research are analyzed.     

Using Principal Components as Auxiliary Variables in Missing Data Estimation

To deal with missing data that arise due to participant nonresponse or attrition, methodologists have recommended an “inclusive” strategy where a large set of auxiliary variables are used to inform the missing data process. In practice, the set of possible auxiliary variables is often too large. We propose using principal components analysis (PCA) to reduce the number of possible auxiliary variables to a manageable number. A series of Monte Carlo simulations compared the performance of the inclusive strategy with eight auxiliary variables (inclusive approach) to the PCA strategy using just one principal component derived from the eight original variables (PCA approach). We examined the influence of four independent variables: magnitude of correlations, rate of missing data, missing data mechanism, and sample size on parameter bias, root mean squared error, and confidence interval coverage. Results indicate that the PCA approach results in unbiased parameter estimates and potentially more accuracy than the inclusive approach. We conclude that using the PCA strategy to reduce the number of auxiliary variables is an effective and practical way to reap the benefits of the inclusive strategy in the presence of many possible auxiliary variables.     

Missing not at random models for latent growth curve analyses

The past decade has seen a noticeable shift in missing data handling techniques that assume a missing at random (MAR) mechanism, where the propensity for missing data on an outcome is related to other analysis variables. Although MAR is often reasonable, there are situations where this assumption is unlikely to hold, leading to biased parameter estimates. One such example is a longitudinal study of substance use where participants with the highest frequency of use also have the highest likelihood of attrition, even after controlling for other correlates of missingness. There is a large body of literature on missing not at random (MNAR) analysis models for longitudinal data, particularly in the field of biostatistics. Because these methods allow for a relationship between the outcome variable and the propensity for missing data, they require a weaker assumption about the missing data mechanism. This article describes 2 classic MNAR modeling approaches for longitudinal data: the selection model and the pattern mixture model. To date, these models have been slow to migrate to the social sciences, in part because they required complicated custom computer programs. These models are now quite easy to estimate in popular structural equation modeling programs, particularly Mplus. The purpose of this article is to describe these MNAR modeling frameworks and to illustrate their application on a real data set. Despite their potential advantages, MNAR-based analyses are not without problems and also rely on untestable assumptions. This article offers practical advice for implementing and choosing among different longitudinal models.     

Model-based recursive partitioning of extended redundancy analysis with an application to nicotine dependence among US adults

Extended redundancy analysis (ERA) is used to reduce multiple sets of predictors to a smaller number of components and examine the effects of these components on a response variable. In various social and behavioural studies, auxiliary covariates (e.g., gender, ethnicity) can often lead to heterogeneous subgroups of observations, each of which involves distinctive relationships between predictor and response variables. ERA is currently unable to consider such covariate-dependent heterogeneity to examine whether the model parameters vary across subgroups differentiated by covariates. To address this issue, we combine ERA with model-based recursive partitioning in a single framework. This combined method, MOB-ERA, aims to partition observations into heterogeneous subgroups recursively based on a set of covariates while fitting a specified ERA model to data. Upon the completion of the partitioning procedure, one can easily examine the difference in the estimated ERA parameters across covariate-dependent subgroups. Moreover, it produces a tree diagram that aids in visualizing a hierarchy of partitioning covariates, as well as interpreting their interactions. In the analysis of public data concerning nicotine dependence among US adults, the method uncovered heterogeneous subgroups characterized by several sociodemographic covariates, each of which yielded different directional relationships between three predictor sets and nicotine dependence.     

Non‐ignorable missingness item response theory models for choice effects in examinee‐selected items

Examinee‐selected item (ESI) design, in which examinees are required to respond to a fixed number of items in a given set, always yields incomplete data (i.e., when only the selected items are answered, data are missing for the others) that are likely non‐ignorable in likelihood inference. Standard item response theory (IRT) models become infeasible when ESI data are missing not at random (MNAR). To solve this problem, the authors propose a two‐dimensional IRT model that posits one unidimensional IRT model for observed data and another for nominal selection patterns. The two latent variables are assumed to follow a bivariate normal distribution. In this study, the mirt freeware package was adopted to estimate parameters. The authors conduct an experiment to demonstrate that ESI data are often non‐ignorable and to determine how to apply the new model to the data collected. Two follow‐up simulation studies are conducted to assess the parameter recovery of the new model and the consequences for parameter estimation of ignoring MNAR data. The results of the two simulation studies indicate good parameter recovery of the new model and poor parameter recovery when non‐ignorable missing data were mistakenly treated as ignorable.     

A Propensity Score Adjustment for Multiple Group Structural Equation Modeling

In the behavioral and social sciences, quasi-experimental and observational studies are used due to the difficulty achieving a random assignment. However, the estimation of differences between groups in observational studies frequently suffers from bias due to differences in the distributions of covariates. To estimate average treatment effects when the treatment variable is binary, Rosenbaum and Rubin (1983a) proposed adjustment methods for pretreatment variables using the propensity score. However, these studies were interested only in estimating the average causal effect and/or marginal means. In the behavioral and social sciences, a general estimation method is required to estimate parameters in multiple group structural equation modeling where the differences of covariates are adjusted. We show that a Horvitz–Thompson-type estimator, propensity score weighted M estimator (PWME) is consistent, even when we use estimated propensity scores, and the asymptotic variance of the PWME is shown to be less than that with true propensity scores. Furthermore, we show that the asymptotic distribution of the propensity score weighted statistic under a null hypothesis is a weighted sum of independent χ² ₁ variables. We show the method can compare latent variable means with covariates adjusted using propensity scores, which was not feasible by previous methods. We also apply the proposed method for correlated longitudinal binary responses with informative dropout using data from the Longitudinal Study of Aging (LSOA). The results of a simulation study indicate that the proposed estimation method is more robust than the maximum likelihood (ML) estimation method, in that PWME does not require the knowledge of the relationships among dependent variables and covariates.     

多水平项目反应理论模型在测验发展中的应用

作者简要介绍了多水平项目反应模型,对多水平项目反应理论与通常项目反应理论之间的关系进行了探讨,得到了多水平项目反应模型参数与通常项目反应模型参数之间的关系,并讨论了多水平项目反应模型的推广模型。通过一个实际例子,用多水平项目反应模型对测验中项目的特征进行分析;检验个体水平和组水平预测变量对能力参数的影响;对项目功能差异进行分析。最后文章就多水平项目反应理论模型的优势与不足进行了讨论     

Analysis of Interactions and Nonlinear Effects with Missing Data: A Factored Regression Modeling Approach Using Maximum Likelihood Estimation

Abstract

When estimating multiple regression models with incomplete predictor variables, it is necessary to specify a joint distribution for the predictor variables. A convenient assumption is that this distribution is a multivariate normal distribution, which is also the default in many statistical software packages. This distribution will in general be misspecified if predictors with missing data have nonlinear effects (e.g., x²) or are included in interaction terms (e.g., x·z). In the present article, we introduce a factored regression modeling approach for estimating regression models with missing data that is based on maximum likelihood estimation. In this approach, the model likelihood is factorized into a part that is due to the model of interest and a part that is due to the model for the incomplete predictors. In three simulation studies, we showed that the factored regression modeling approach produced valid estimates of interaction and nonlinear effects in regression models with missing values on categorical or continuous predictor variables under a broad range of conditions. We developed the R package mdmb, which facilitates a user-friendly application of the factored regression modeling approach, and present a real-data example that illustrates the flexibility of the software.     

Estimating Incremental Validity Under Missing Data

A common form of missing data is caused by selection on an observed variable (e.g., Z). If the selection variable was measured and is available, the data are regarded as missing at random (MAR). Selection biases correlation, reliability, and effect size estimates when these estimates are computed on listwise deleted (LD) data sets. On the other hand, maximum likelihood (ML) estimates are generally unbiased and outperform LD in most situations, at least when the data are MAR. The exception is when we estimate the partial correlation. In this situation, LD estimates are unbiased when the cause of missingness is partialled out. In other words, there is no advantage of ML estimates over LD estimates in this situation. We demonstrate that under a MAR condition, even ML estimates may become biased, depending on how partial correlations are computed. Finally, we conclude with recommendations about how future researchers might estimate partial correlations even when the cause of missingness is unknown and, perhaps, unknowable.